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Datasets

Following cancer genome datasets are available

Cancer Title Publish N ER+ HER2+ TNBC Survival Alterations Quantities Etc.
0 Breast METABRIC Nat Commun 2016 1980 1398 247 320 OS CNAs, Mutations Linear CNAs, Expressions PAM50, chemotherapy, hormone therapy, radio therapy
1 Breast TCGA 1105 691 164 117 OS, DFS CNAs, Mutations Linear CNAs, Expressions, Methylations N = 1099 with RNA-seq data; N = 1080 with sequencing and CNA data
2 Breast TCGA (2015) Cell 2015 817 519 121 84 OS, DFS CNAs, Mutations Linear CNAs, Expressions, Methylations N = 817 with complete sequencing data
3 Breast TCGA (2012) Nature 2012 825 489 110 119 OS CNAs, Mutations Linear CNAs, Expressions, Methylations N = 482 with complete sequencing data
4 Breast GSE41994 Cancer Res 2013 107 86 11 1 DFS Expressions PIK3CA mut, aromatase inhibitor, anastrozol, letrozol
5 Breast GSE25066 JAMA 2011 508 287 6 178 DRFS Expressions PAM50, chemosensitivity
6 Breast GSE19615 Nat Med 2010 115 48 35 27 DRFS Expressions chemotherapy, hormonal rx, histology
7 Breast GSE2034 Lancet 2005 286 DFS Expressions
8 Breast GSE2990 J Natl Cancer Inst. 2006 125 85 RFS Expressions
9 Breast GSE12276 Nature 2009 204 RFS Expressions brain relapse
10 Breast GSE9893 Clin Cancer Res 2008 155 OS, DMFS Expressions adjuvant therapy, metastasis, histology
11 Breast GSE55348 Oncotarget 2015 53 2 50 DFS Expressions herceptin
12 Breast GSE1456 (GPL97) Breast Cancer Res 2005 159 61 15 62 OS, RFS Expressions
13 Breast GSE11121 Cancer Res 2008 200 DMFS Expressions
14 Breast GSE37751 J Clin Invest 2014 108 31 14 OS Expressions chemotherapy, hormone therapy, neojuvant therapy
15 Breast GSE16446 Lancet Oncol 2014 120 118 28 OS, DMFS Expressions
16 Breast GSE22219 Cancer Res 2011 216 134 DRFS Expressions
17 Breast GSE6532 Proc Natl Acad Sci 2007 741 287 RFS, DMFS Expressions
18 Breast GSE5327 Proc Natl Acad Sci 2007 58 DMFS, LMFS Expressions (lung) metastasis
19 Breast GSE12093 Breast Cancer Res Treat 2009 136 DFS Expressions
20 Breast GSE17705 J Clin Oncol 2010 298 298 DRFS Expressions
21 Breast GSE20685 BMC Cancer 2011 327 OS, DMFS Expressions adjuvant chemotherapy
22 Breast GSE21653 PLoS One 2011 266 136 29 87 DFS Expressions ki67 ihc, p53 ihc
23 Breast GSE2603 Nature 2005 121 44 26 25 DMFS, LMFS, BMFS Expressions van't veer signature
24 Breast GSE26971 Clin Cancer Res 2011 277 DMFS Expressions Tamoxifen
25 Breast GSE42568 Carcinogenesis 2013 121 67 OS, RFS Expressions
26 Breast GES45255 Genome Biol 2013 139 52 62 15 DFS, DMFS Expressions Tamoxifen et al.
27 Breast GSE7390 Bioinformatics 2015 198 OS, RFS, DMFS Expressions veridex risk
28 Breast GSE31519 Breast Cancer Res 2011 67 67 DFS Expressions Chemotherapy, Neoadjuvant chemotherapy
29 Breast GSE3494 Proc Natl Acad Sci 2005 502 426 OS Expressions p53 status
30 Breast GSE4922 Cancer Res 2006 578 422 DFS Expressions p53 status, endocrine therapy
31 Breast GSE33658 Breast Cancer Res Treat 2011 22 22 Expressions response
32 Breast GSE41998 Clin Cancer Res 2013 279 100 28 140 Expressions Ixabepilone, Paclitaxel
33 Breast GSE59515 J Clin Oncol 2015 79 Expressions Clinical response, Letrozole
34 Breast GSE20181 Breast Cancer Res 2010 176 Expressions Letrozole
35 Breast GSE18378 Breast Cancer Res Treat 2010 60 Expressions Anatrozole
36 Breast GSE48905 PLoS One 2014 42 Expressions Fulvestrant
37 Various GSE2109 2158 Expressions
38 Breast GSE22513 Clin Cancer Res 2010 28 Expressions Response
39 Breast GSE5847 Int J Cancer 2008 95 31 Expressions
40 Breast GSE18864 J Clin Oncol 2010 84 26 18 38 Expressions BRCA1, p53
41 Breast GSE20194 Breast Cancer Res 2010 278 140 59 71 Expressions Herceptin treatment